Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CDC73

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
lymphoblast from bone marrow
cell line
K562
tissue
lymphoblast from bone marrow
chip antibody
Parafibromin (rabbit, bethyl laboratories, A300-171A)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
crosslink 5 min), harvest, 10% of NIH 3T3 spike in, lysis of cells, fragment with covaris libraries were prepared for sequencing using standard NEB protocols

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
38199613
Reads aligned (%)
90.6
Duplicates removed (%)
8.5
Number of peaks
3708 (qval < 1E-05)

hg19

Number of total reads
38199613
Reads aligned (%)
90.1
Duplicates removed (%)
9.9
Number of peaks
3536 (qval < 1E-05)

Base call quality data from DBCLS SRA